NGS Variant Analysis and coverage depth

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Aim: Subsample a large Drosophila dataset to measure the effect of coverage depth on variant calls

Please navigate to the GitHub page: https://github.com/BITS-VIB/NGS-Variant-Analysis-and-coverage-depth[1]

This training material was put on our GitHub site to ease updating it and receiving your feedback.

When on the Hub, please read the accompanying markdown document. Scripts are provided in the Scripts folder in order to repeat this work (additional scripts are present elsewhere in this GitHub repository). The data being quite large, you will need to download it directly from the public sources as indicated in the report.

Have a nice data mining day.

Technical.png This data may be updated at later time to reflect changes or include corrections, please refer to the GitHub page for the latest version

References:
  1. ↑ https://github.com/BITS-VIB/NGS-Variant-Analysis-and-coverage-depth


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