PeakAnalyzer
From BITS wiki
suggests : MACS
PeakAnalyzer ([1]) is a Java GUI application driving two main utilities PeakAnnotator and PeakSplitter.
- PeakAnalyzer can also be used at CLI and takes MACS results and refines the location of peaks. The main java graphical interface gives you access to other programs:
- PeakAnnotator takes care of annotating peaks with transcript models
- PeakSplitter splits peaks in sub-peaks for finer analysis
REM: All these commands are also available for scripting without graphical interface and are used in the ChIP-Seq CLI tutorial (TBD).
References:
- ↑
Mali Salmon-Divon, Heidi Dvinge, Kairi Tammoja, Paul Bertone
PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.
BMC Bioinformatics: 2010, 11;415
[PubMed:20691053] ##WORLDCAT## [DOI] (I e)
