PubMA Exercise.7
IPA analysis of the GEO2R DE table
[ Main_Page | Hands-on Analysis of public microarray datasets | PubMA_Exercise.6 ]
The following content was obtained with the DE table generates by GEO2R. Very similar resuts are expected with the results from RobiNA or from the Affy console
Contents
Introduction
Ingenuity Pathway Analysis (IPA) is strongly advised for more advanced users/usage. You can use IPA on any Java-installed computer after asking for a personal account to mailto:bits@vib.be and login in here . Please keep in mind that IPA is only meant for human/mouse/rat data.
IPA Tutorial material
The starting material for the IPA upload can be downloaded from this link (bottom of this page)
IPA analysis
Upload data in IPA
Start core analysis and set filter
Review the obtained core results
A full summary report can be downloaded from the server (see link at bottom of this page)
Much more information and tools are available in IPA to continue the analysis and identify markers and targets for validation.
If you are a VIB scientist with 2-5 interested VIB colleagues, you may ask for a free custom 1-day training provided by BITS inside your lab. Please email us to discuss the possibilities
download exercise files
Download exercise files here.
References:
[ Main_Page | Hands-on Analysis of public microarray datasets | PubMA_Exercise.6 ]
