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| Date/Time | Thumbnail | Dimensions | User | Comment | |
|---|---|---|---|---|---|
| current | 12:44, 8 September 2015 | | 48 × 48 (1 KB) | Abotzki (Talk | contribs) | |
| 13:14, 31 August 2012 |  | 48 × 48 (1 KB) | Jjacob (Talk | contribs) |
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File usage
More than 100 pages link to this file. The following list shows the first 100 page links to this file only. A full list is available.
- Analyse GEO2R data with R and Bioconductor
- Analyze GEO data with GEO2R
- Analyze GEO data with the Affymetrix software
- Analyze public microarray data using Genevestigator
- Analyzing data from different qPCR experiments that are spread over time in qbase+
- Analyzing gene expression data in qbase+
- Awk
- Bowtie
- Bowtie2
- Breakdancer
- Build a complex genomic locus sequence using CLC Main
- Call variants with samtools 1.0
- ChIPseq toolbox
- Changing tables in Prism
- Clean adaptor containing reads from FastQ data at command line
- Copying data annotation
- Create a GC content track
- Create a mappability track
- DNA sequence analysis
- DNAseq toolbox
- Download read information and FASTQ data from the SRA
- Ensembl
- Exercises on Gene Expression
- Exercises on Protein Structure
- FastQC
- Find GEO datasets
- Find Transcriptome Signatures with TranscriptomeBrowser
- GATK
- GATK HaplotypeCaller Analysis of BWA (mem) mapped Illumina reads
- GV Exercise.1
- GV Exercise.2
- GV Exercise.3
- GV Exercise.4
- GV Exercise.5
- GV Exercise.6
- GV Exercise.7
- GV Exercise.8
- Galaxy beginner's tutorial
- Get auto-completion back in bash
- GraphPad Prism statistical analyses
- Hands-on introduction to NGS RNASeq DE analysis
- Hands-on introduction to NGS variant analysis
- Identify the Phred scale of quality scores used in fastQ
- Install ChIP-Seq training command line software
- Introduction to RNA-Seq analysis
- Loading data into qbase+
- Manipulate bash variables
- Mappers
- Monitor CLI application resource needs
- Multiple sequence alignment
- NGS-formats
- NGS Exercise.1
- NGS Exercise.3
- NGS Exercise.3b
- NGS Exercise.3c
- NGS Exercise.4
- NGS Exercise.4b
- NGS Exercise.5
- NGS Exercise.5 GATK
- NGS Exercise.5b
- NGS Exercise.6
- NGS Exercise.7
- NGS Exercise.7 SnpEff
- NGS Exercise.7 annovar
- NGS Exercise.7 vcfCodingSnps
- NGS Exercise.8
- NGS Exercise.9
- NGS RNASeq DE Exercise.1
- NGS RNASeq DE Exercise.1a
- NGS RNASeq DE Exercise.4
- NGS RNASeq DE Exercise.5
- NGS RNASeq DE Exercise.6
- NGS data analysis
- NGS variant analysis: laptop configuration and files
- NGS variant analysis custom functions and code
- Normalize CEL files with RMAExpress
- Protein motifs and domains
- PubMA Exercise.1
- PubMA Exercise.2
- PubMA Exercise.3
- PubMA Exercise.7
- Q&A added during the NGS variant analysis training
- Q&A added during the NGS variant analysis training2
- Quality control of NGS data
- Quality control of NGS data in Galaxy
- RSeQC
- ReadQC toolbox
- Restriction cloning of a single fragment in CLC tutorial
- SAM/BAM
- Samtools
- Search in a given column of a file with awk
- Searching Genbank
- Second exercise on analyzing gene expression data in qbase+
- SnapGene
- Unix toolbox
- Varscan2
- Template:Tip
- Category:HandsOn
- Category:Howto
- Category:Overview
